STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM32506.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
AKM31329.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.633
AKM31330.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.607
ANI21778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.570
AKM32311.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.547
AKM32892.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
ANI21779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.532
AKM33005.2
Lipocalin-like domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
fabG-4
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
AKM32923.3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
AKM29550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.409
Your Current Organism:
Pandoraea faecigallinarum
NCBI taxonomy Id: 656179
Other names: CCM 2766, DSM 23572, NBRC 106092, P. faecigallinarum, Pandoraea faecigallinarum Sahin et al. 2011, Pandoraea sp. KOx, strain KOx
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.