STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB870_07335MATE family efflux transporter; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)    
Predicted Functional Partners:
AKM30354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.763
AKM32312.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.761
AKM29937.3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.754
AKM31792.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.747
ANI21693.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.738
AKM30745.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.737
AKM28892.1
FRG domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
AKM31670.3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.734
ANI21744.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.734
AB870_13170
6-O-methylguanine DNA methyltransferase; Regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
Your Current Organism:
Pandoraea faecigallinarum
NCBI taxonomy Id: 656179
Other names: CCM 2766, DSM 23572, NBRC 106092, P. faecigallinarum, Pandoraea faecigallinarum Sahin et al. 2011, Pandoraea sp. KOx, strain KOx
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.