STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM30711.2EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
AKM32787.1
EscS/YscS/HrcS family type III secretion system export apparatus protein; Involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.938
AKM31268.1
EscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.933
AKM32900.1
EscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.926
AKM30721.1
EscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.921
AKM30709.3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.914
AKM30720.1
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.899
AKM32899.3
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.891
ssaR
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.889
ANI21628.1
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.882
AKM31262.1
EscV/YscV/HrcV family type III secretion system export apparatus protein; With SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.879
Your Current Organism:
Pandoraea faecigallinarum
NCBI taxonomy Id: 656179
Other names: CCM 2766, DSM 23572, NBRC 106092, P. faecigallinarum, Pandoraea faecigallinarum Sahin et al. 2011, Pandoraea sp. KOx, strain KOx
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