STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS189_00985ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
ALO65325.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.962
ALO65327.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
ALO65326.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.879
ALO67164.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.830
ALO68237.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.728
ALO68238.1
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.694
ALO66361.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
ALO66366.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.646
ALO67163.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.589
ALO66362.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.582
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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