STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO65336.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
ALO65335.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.974
ALO65337.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.967
ALO68689.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 0.907
ALO68214.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.890
ALO65320.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.880
ALO66112.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.874
ALO66104.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.873
ALO65452.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.871
ALO67161.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.871
ALO65529.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.868
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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