STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO65630.1Putrescine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
ALO65629.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
ALO65367.1
Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.751
ALO65631.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.732
ALO65896.1
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
ALO67028.1
Amine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
ALO67632.1
Naringenin-chalcone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.586
ALO68249.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.582
ALO68451.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.582
ALO68168.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.582
ALO68328.1
Gamma-aminobutyraldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
   
 0.518
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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