STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO66424.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)    
Predicted Functional Partners:
ALO68414.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
ALO66426.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
ALO66423.1
Co-chaperone YbbN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
ALO65675.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
ALO68643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
ALO67708.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.538
ALO68413.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.533
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
       0.517
AS189_13895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
ALO67712.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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