STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO68595.1Citrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (269 aa)    
Predicted Functional Partners:
ALO68596.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
ALO68097.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.908
ALO68106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.681
ALO66629.1
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.642
ALO66628.1
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.586
ALO67741.1
acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.521
ALO68356.1
L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.508
ALO67606.1
methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.437
ALO67731.1
methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.437
purD
Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.
     
 0.435
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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