STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO67972.1NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
ALO68663.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.833
ALO67971.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
ALO67973.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.545
ALO68111.1
Glyoxalase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.500
ALO68662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
ALO65636.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.413
ALO65703.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.413
ALO66474.1
NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.412
ALO67090.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.412
Your Current Organism:
Arthrobacter alpinus
NCBI taxonomy Id: 656366
Other names: A. alpinus, Arthrobacter alpinus Zhang et al. 2010, Arthrobacter sp. A3, Arthrobacter sp. S6-3, CGMCC 1.8950, DSM 22274, strain S6-3
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