Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ADQ13770.1KEGG: hor:Hore_23220 putative sigma E regulatory protein, MucB/RseB. (255 aa)    
Predicted Functional Partners:
ADQ13769.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23230 ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.923
ADQ13768.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23240 ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.918
ADQ15125.1
PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: hor:Hore_13330 positive regulator of sigma E, RseC/MucC.
  
  
 0.843
ADQ14274.1
KEGG: tde:TDE2704 hypothetical protein.
 
     0.768
ADQ15761.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23230 ABC-type transport system, involved in lipoprotein release, permease component.
  
     0.757
ADQ15762.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23240 ABC-type transport system, involved in lipoprotein release, permease component.
  
     0.753
ADQ13771.1
KEGG: hor:Hore_23210 hypothetical protein.
       0.752
ADQ13767.1
ABC transporter related protein; KEGG: hor:Hore_23250 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.738
ADQ14697.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: hor:Hore_11810 MotA/TolQ/ExbB proton channel.
  
     0.657
ADQ14276.1
KEGG: tde:TDE2702 hypothetical protein.
 
     0.655
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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