STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ13888.1PFAM: protein of unknown function DUF490; KEGG: hor:Hore_17710 hypothetical protein. (1479 aa)    
Predicted Functional Partners:
ADQ13889.1
PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; KEGG: hor:Hore_17680 surface antigen (D15).
 
   
 0.910
ADQ13887.1
KEGG: hor:Hore_17720 hypothetical protein.
 
     0.903
ADQ13936.1
PFAM: permease YjgP/YjgQ family protein; KEGG: hor:Hore_17610 permease YjgP/YjgQ family protein.
 
   
 0.780
ADQ13903.1
KEGG: hor:Hore_17480 hypothetical protein.
 
     0.775
ADQ13904.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.766
ADQ15062.1
KEGG: hor:Hore_12160 peptidyl-prolyl cis-trans isomerase; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
  
   
 0.760
ADQ14205.1
PFAM: outer membrane efflux protein; KEGG: npu:Npun_F6385 outer membrane efflux protein.
 
     0.757
ADQ13902.1
PFAM: permease YjgP/YjgQ family protein; KEGG: hor:Hore_17490 permease YjgP/YjgQ family protein.
  
   
 0.741
ADQ14693.1
PFAM: S-layer domain-containing protein; KEGG: hor:Hore_11770 S-layer domain protein.
  
     0.732
ADQ14697.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: hor:Hore_11810 MotA/TolQ/ExbB proton channel.
  
     0.716
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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