Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADQ13915.1KEGG: vsa:VSAL_p320_02 hypothetical protein. (274 aa)    
Predicted Functional Partners:
ADQ14873.1
PFAM: Type II secretion system F domain; KEGG: hor:Hore_05990 Tfp pilus biogenesis protein PilC.
 
  
 0.798
ADQ14844.1
PFAM: Type II secretion system F domain; KEGG: cpf:CPF_2569 type II secretion system protein F.
 
  
 0.749
ADQ14875.1
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: hor:Hore_05970 Tfp pilus assembly protein PilB.
 
 
 0.728
ADQ14845.1
KEGG: hor:Hore_05970 Tfp pilus assembly protein PilB; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 
 0.706
ADQ14870.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.700
ADQ13914.1
Hypothetical protein; KEGG: mvn:Mevan_0278 cell surface protein.
 
    
0.638
ADQ14874.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: hor:Hore_05980 Tfp pilus assembly protein, pilus retraction ATPase PilT; SMART: AAA ATPase.
 
  
 0.566
ADQ14863.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: hor:Hore_06050 Tfp pilus assembly protein, ATPase PilM.
 
  
 0.498
ADQ15114.1
KEGG: hor:Hore_12920 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
  
 0.462
ADQ15115.1
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: hor:Hore_12930 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1.
 
  
 0.444
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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