STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ14380.1Sigma54 specific transcriptional regulator, Fis family; KEGG: cbi:CLJ_B3468 sigma-54 dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase. (532 aa)    
Predicted Functional Partners:
ADQ14493.1
KEGG: nth:Nther_0252 response regulator receiver protein; PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat.
     0.917
ADQ14411.1
RNA polymerase, sigma 54 subunit, RpoN; KEGG: tte:TTE1764 DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor; sigma-54 factor core-binding region.
 
   
 0.802
ADQ14382.1
PFAM: dihydropteroate synthase DHPS; KEGG: nhl:Nhal_0006 dihydropteroate synthase DhpS.
       0.775
ADQ14381.1
PFAM: histidine biosynthesis protein; flavoprotein; KEGG: mmb:Mmol_0896 flavoprotein; Belongs to the HisA/HisF family.
       0.773
ADQ14383.1
PFAM: protein of unknown function DUF447; KEGG: meh:M301_0952 protein of unknown function DUF447.
       0.773
ADQ14384.1
KEGG: mei:Msip34_1505 beta-ribofuranosylaminobenzene 5'-phosphate synthase family; TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein.
       0.773
ADQ14379.1
PFAM: 5'-Nucleotidase domain-containing protein; KEGG: cdf:CD2537 putative membrane-associated 5'-nucleotidase/phosphoesterase.
       0.447
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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