Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADQ14455.1Hypothetical protein; KEGG: bse:Bsel_2790 uncharacterized conserved protein UCP020408. (96 aa)    
Predicted Functional Partners:
ADQ14454.1
Hypothetical protein; KEGG: zpr:ZPR_2531 polyferredoxin-like protein.
  
    0.558
ADQ14456.1
PFAM: Radical SAM domain protein; KEGG: gtn:GTNG_3219 arylsulfatase regulator Fe-S oxidoreductase.
       0.478
ADQ15291.1
KEGG: hor:Hore_01730 putative transcriptional regulator, CopG family.
  
     0.423
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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