STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ14465.1PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: hor:Hore_15330 methylamine-specific methylcobalamin coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family. (449 aa)    
Predicted Functional Partners:
ADQ14463.1
KEGG: dhd:Dhaf_2640 uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
  
  0.975
ADQ14466.1
PFAM: cobalamin synthesis protein P47K; KEGG: hor:Hore_15320 cobalamin synthesis protein P47K.
 
    0.946
ADQ14464.1
KEGG: dhd:Dhaf_3800 hypothetical protein.
  
  
 0.791
ADQ14461.1
Transcriptional regulator, AraC family; KEGG: hor:Hore_15370 helix-turn-helix-domain containing protein AraC type; PFAM: helix-turn-helix- domain containing protein AraC type; Transcription regulator,histidine kinase sensor-like; SMART: Helix-turn-helix, AraC domain.
  
   
 0.769
ADQ14460.1
PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: hor:Hore_15360 methionine synthase.
 
  
 0.701
ADQ13981.1
KEGG: hmo:HM1_1037 glutamate synthase [nadph] large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.572
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.529
ADQ15132.1
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: ctc:CTC01806 5-methyltetrahydrofolate--homocysteine methyltransferase.
  
  
 0.409
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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