STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ14874.1TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: hor:Hore_05980 Tfp pilus assembly protein, pilus retraction ATPase PilT; SMART: AAA ATPase. (356 aa)    
Predicted Functional Partners:
ADQ14873.1
PFAM: Type II secretion system F domain; KEGG: hor:Hore_05990 Tfp pilus biogenesis protein PilC.
  
 0.963
ADQ14870.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.887
ADQ14863.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: hor:Hore_06050 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.858
ADQ14875.1
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: hor:Hore_05970 Tfp pilus assembly protein PilB.
 
  
0.840
ADQ14872.1
KEGG: hor:Hore_06000 Tfp pilus assembly protein, major pilin PilA.
 
  
 0.832
ADQ14844.1
PFAM: Type II secretion system F domain; KEGG: cpf:CPF_2569 type II secretion system protein F.
  
 0.816
ADQ14843.1
KEGG: hor:Hore_06000 Tfp pilus assembly protein, major pilin PilA.
 
   
 0.767
ADQ14871.1
Hypothetical protein; KEGG: dat:HRM2_11400 GspG1.
 
  
 0.669
ADQ15114.1
KEGG: hor:Hore_12920 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
     
 0.600
ADQ13915.1
KEGG: vsa:VSAL_p320_02 hypothetical protein.
 
  
 0.566
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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