STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15304.1PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: hor:Hore_02480 extradiol ring-cleavage dioxygenase class III protein subunit B. (272 aa)    
Predicted Functional Partners:
ADQ15303.1
PFAM: AMMECR1 domain protein; KEGG: hor:Hore_02490 AMMECR1 domain protein.
     0.992
ADQ15302.1
PFAM: Radical SAM domain protein; KEGG: fno:Fnod_0983 radical SAM domain-containing protein.
 
     0.923
rpsI
PFAM: ribosomal protein S9; KEGG: hor:Hore_02470 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.563
ADQ14905.1
KEGG: chy:CHY_2436 putative lipoprotein protein.
  
     0.534
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.492
ADQ15156.1
KEGG: tpd:Teth39_1726 hypothetical protein.
  
     0.483
ADQ14197.1
KEGG: tex:Teth514_0250 hypothetical protein.
  
     0.458
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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