STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15379.1KEGG: hor:Hore_00610 signal transduction histidine kinase, LytS. (180 aa)    
Predicted Functional Partners:
ADQ14787.1
PFAM: protein of unknown function DUF988; KEGG: hor:Hore_07380 predicted membrane protein.
  
   
 0.676
ADQ14213.1
Membrane protein; Manually curated; KEGG: hor:Hore_08330 predicted membrane protein.
  
   
 0.585
ADQ15378.1
biotin/acetyl-CoA-carboxylase ligase; KEGG: hor:Hore_00660 biotin (acetyl-CoA carboxylase) synthetase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase.
       0.570
ADQ15377.1
PFAM: basic membrane lipoprotein; KEGG: hor:Hore_00670 basic membrane lipoprotein.
       0.513
ADQ14163.1
KEGG: hor:Hore_10030 putative proton-coupled thiamine transporter YuaJ; TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ.
  
   
 0.454
fhs
KEGG: hor:Hore_00600 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; Belongs to the formate--tetrahydrofolate ligase family.
       0.435
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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