STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15388.1PFAM: RNA binding S1 domain protein; KEGG: hor:Hore_00520 RNA binding S1 domain protein. (121 aa)    
Predicted Functional Partners:
ADQ15386.1
PFAM: Ppx/GppA phosphatase; KEGG: hor:Hore_00540 exopolyphosphatase.
       0.608
ADQ15387.1
PFAM: protein of unknown function DUF501; KEGG: hor:Hore_00530 hypothetical protein.
       0.545
ADQ15391.1
PFAM: Septum formation initiator; KEGG: hor:Hore_00500 septum formation initiator.
  
    0.529
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
    0.514
ADQ15389.1
PFAM: Integrase catalytic region; KEGG: cth:Cthe_3182 integrase catalytic subunit.
       0.469
ADQ15384.1
TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: hor:Hore_00570 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
    0.465
ADQ14221.1
PFAM: PfkB domain protein; KEGG: hor:Hore_18220 fructokinase.
  
     0.462
ADQ15483.1
PFAM: protein of unknown function UPF0118; KEGG: cce:Ccel_2541 protein of unknown function UPF0118.
  
     0.441
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
    0.437
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.