Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ15409.1Stage V sporulation protein B; KEGG: hor:Hore_21180 polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein. (541 aa)    
Predicted Functional Partners:
ADQ14887.1
PFAM: protein of unknown function DUF965; KEGG: hor:Hore_05760 hypothetical protein; Belongs to the UPF0297 family.
  
     0.749
ADQ15407.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: hor:Hore_21160 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
 
     0.693
ADQ15408.1
KEGG: hor:Hore_21170 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase.
  
    0.689
ADQ15356.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hor:Hore_01000 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
    0.675
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.667
ADQ13930.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hor:Hore_16490 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
    0.585
ADQ14288.1
Transcriptional regulator, DeoR family; PFAM: sugar-binding domain-containing protein; KEGG: hor:Hore_15840 transcriptional regulator, DeoR family.
  
     0.578
ADQ15779.1
PFAM: protein of unknown function DUF951; KEGG: tmt:Tmath_2267 protein of unknown function DUF951.
  
     0.574
ADQ14826.1
PFAM: protein of unknown function DUF322; KEGG: hor:Hore_06280 hypothetical protein.
  
     0.565
ADQ14797.1
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.562
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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