STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15433.1PFAM: protein of unknown function DUF1021; KEGG: hor:Hore_21690 hypothetical protein. (84 aa)    
Predicted Functional Partners:
ADQ14288.1
Transcriptional regulator, DeoR family; PFAM: sugar-binding domain-containing protein; KEGG: hor:Hore_15840 transcriptional regulator, DeoR family.
  
     0.680
ADQ15434.1
PFAM: protein of unknown function DUF458; KEGG: hor:Hore_21710 hypothetical protein.
 
     0.665
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.586
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.464
ADQ15432.1
KEGG: hor:Hore_21650 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein.
       0.455
ADQ14272.1
KEGG: gtn:GTNG_0560 putative tryptophan transport protein.
  
     0.453
ADQ15773.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: hor:Hore_23330 predicted membrane protein.
   
    0.426
ADQ14675.1
Peptidoglycan-binding lysin domain; KEGG: hor:Hore_11460 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
     0.424
ADQ15437.1
KEGG: hor:Hore_21920 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.
       0.405
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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