STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15527.1KEGG: cbl:CLK_2276 peptidase; TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein. (412 aa)    
Predicted Functional Partners:
ADQ15526.1
KEGG: tai:Taci_0425 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region.
 
 
 0.933
ADQ15207.1
KEGG: ctc:CTC00071 diaminopropionate ammonia-lyase; TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 0.930
ADQ15529.1
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
 
 
 
 0.890
ADQ15521.1
Selenium metabolism protein SsnA; KEGG: pmo:Pmob_1737 putative chlorohydrolase/aminohydrolase; TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase.
 
    0.832
ADQ15530.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aco:Amico_0198 pyridoxal-5'-phosphate-dependent protein beta subunit.
 
   
 0.826
ADQ15586.1
PFAM: amidohydrolase; KEGG: pmo:Pmob_1730 dihydropyrimidinase.
 
  
 0.781
ADQ15528.1
Cupin 2 conserved barrel domain protein; KEGG: mta:Moth_2004 MerR family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.634
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: hor:Hore_02850 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.555
ADQ15515.1
KEGG: pmo:Pmob_1743 dihydroorotate dehydrogenase family protein; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase.
  
 
 0.524
ADQ15522.1
S-adenosylhomocysteine deaminase; KEGG: pmo:Pmob_1736 amidohydrolase; PFAM: amidohydrolase.
 
    0.521
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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