Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADQ15540.1PFAM: O-antigen polymerase; KEGG: hor:Hore_18850 O-antigen polymerase. (397 aa)    
Predicted Functional Partners:
ADQ15539.1
KEGG: nph:NP1336A hypothetical protein.
       0.648
ADQ14096.1
Undecaprenyl-phosphate galactose phosphotransferase; KEGG: ppr:PBPRA0352 intercellular adhesion protein A; PFAM: sugar transferase; glycosyl transferase family 2.
  
  
 0.516
ADQ15538.1
KEGG: lba:Lebu_0008 hypothetical protein.
       0.510
ADQ13888.1
PFAM: protein of unknown function DUF490; KEGG: hor:Hore_17710 hypothetical protein.
  
     0.477
ADQ15537.1
PFAM: major facilitator superfamily MFS_1; KEGG: nth:Nther_0686 major facilitator superfamily MFS_1.
       0.434
ADQ14020.1
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: kol:Kole_0012 polysaccharide export protein.
 
  
 0.409
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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