STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15779.1PFAM: protein of unknown function DUF951; KEGG: tmt:Tmath_2267 protein of unknown function DUF951. (59 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.809
ADQ14887.1
PFAM: protein of unknown function DUF965; KEGG: hor:Hore_05760 hypothetical protein; Belongs to the UPF0297 family.
  
     0.747
ADQ14757.1
PFAM: protein of unknown function DUF448; KEGG: hor:Hore_07830 predicted nucleic-acid-binding protein implicated in transcription termination.
  
     0.661
ADQ14797.1
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.628
ADQ15780.1
KEGG: hor:Hore_23400 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein.
       0.590
ADQ15409.1
Stage V sporulation protein B; KEGG: hor:Hore_21180 polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein.
  
     0.574
ADQ15775.1
KEGG: hor:Hore_23350 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
 
     0.528
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
     0.524
ADQ15013.1
PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: hor:Hore_09780 fibronectin-binding A domain protein.
  
     0.511
ADQ15777.1
KEGG: bld:BLi03881 YwoA; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
  
    0.497
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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