STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ15785.1PFAM: protein of unknown function DUF554; KEGG: hor:Hore_23500 uncharacterized membrane protein, possible Na+ channel or pump. (229 aa)    
Predicted Functional Partners:
ADQ15786.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: hor:Hore_23510 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
       0.701
ADQ15787.1
KEGG: tjr:TherJR_3009 cobyrinic acid ac-diamide synthase.
       0.700
ADQ15788.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: hor:Hore_23530 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
       0.580
ADQ14304.1
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hor:Hore_15740 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
  
     0.488
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.460
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.431
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
       0.415
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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