STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
SMB93286.1DNA-binding transcriptional regulator, LysR family; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: tgr:Tgr7_0820 transcriptional regulator, LysR family; SPTR: A1HMF8 Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR. (303 aa)    
Predicted Functional Partners:
SMB90542.1
SPTR: A5LZZ7 Transcriptional regulator, putative; PFAM: regulatory protein LysR; InterPro IPR000847; COGs: COG0583 Transcriptional regulator; KEGG: pfo:Pfl01_1050 LysR family transcriptional regulator.
  
     0.753
SMB93280.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.657
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.651
pyrR
Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.
       0.649
SMB93294.1
Transcriptional regulator, LysR family; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: tcx:Tcr_1555 LysR family transcriptional regulator; SPTR: A1HMF8 Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR.
 
    
0.583
SMB93264.1
Transcriptional regulator, TraR/DksA family; InterPro IPR020460:IPR020458:IPR000962:IPR014240; COGs: COG1734 DnaK suppressor protein; KEGG: ppd:Ppro_0421 TraR/DksA family transcriptional regulator; SPTR: A1HSA8 Transcriptional regulator, TraR/DksA family; TIGRFAM: sporulation protein, yteA family.
  
  
 0.480
SMB82202.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; KEGG: vfm:VFMJ11_2168 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A4BEA8 Putative NADH oxidase; InterPro IPR013027:IPR000103:IPR001327:IPR004099:IPR001763; SMART: Rhodanese domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein.
  
  
 0.443
SMB96220.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; InterPro IPR013027:IPR000103:IPR001327:IPR004099:IPR001763; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; KEGG: vpa:VPA0949 putative NADH oxidase; SPTR: A2P2Z9 NADH oxidase, putative; SMART: Rhodanese domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein.
  
  
 0.443
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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