STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB93402.1Hypothetical protein; InterPro IPR002829; COGs: COG1852 conserved hypothetical protein; KEGG: gsu:GSU0131 hypothetical protein; SPTR: A1HMX5 Putative uncharacterized protein; PFAM: protein of unknown function DUF116. (252 aa)    
Predicted Functional Partners:
SMB93408.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.841
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.837
SMB93405.1
Hypothetical protein; InterPro IPR007395:IPR006025; COGs: COG2738 Zn-dependent protease; KEGG: tgr:Tgr7_3069 peptidase, membrane zinc metallopeptidase, putative; SPTR: A3ZMW0 Putative uncharacterized protein; PFAM: peptidase membrane zinc metallopeptidase putative.
       0.827
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.814
SMB93431.1
Serine/threonine protein kinase; InterPro IPR001245:IPR017442:IPR005543:IPR002290:IPR017441:IPR0082 71:IPR000719; COGs: COG0515 Serine/threonine protein kinase; KEGG: azo:azo3774 putative serine/threonine protein kinase; SPTR: Q8R9T6 Probable serine/threonine-protein kinase Sps1; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein.
       0.797
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.782
SMB93424.1
Protein phosphatase; InterPro IPR014045:IPR010822:IPR001932; COGs: COG0631 Serine/threonine protein phosphatase; KEGG: mxa:MXAN_5349 serine/threonine protein phosphatase; SPTR: A1HMX0 Protein serine/threonine phosphatases; SMART: protein phosphatase 2C domain protein; PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; PRIAM: Phosphoprotein phosphatase.
       0.779
SMB93428.1
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; InterPro IPR001182; COGs: COG0772 Bacterial cell division membrane protein; KEGG: sat:SYN_01745 cell division protein; SPTR: A1HMW9 Cell cycle protein; PFAM: cell cycle protein; Belongs to the SEDS family.
       0.754
SMB93421.1
Hypothetical protein.
       0.709
priA
Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.695
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.