STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB93636.1Radical SAM superfamily protein; InterPro IPR007197:IPR006638; COGs: COG1243 Histone acetyltransferase; KEGG: dol:Dole_1501 radical SAM domain-containing protein; SPTR: A1HN81 Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein. (360 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.845
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
   0.822
SMB93631.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
    0.654
SMB93643.1
SRP54-type protein, helical bundle domain; InterPro IPR013822; KEGG: tcx:Tcr_1942 signal recognition particle-docking protein FtsY; SPTR: P51835 Cell division protein ftsY homolog; PFAM: GTP-binding signal recognition particle SRP54 helical bundle.
       0.627
tmcAL
Predicted nucleotidyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
 
     0.610
SMB93823.1
Hypothetical protein; InterPro IPR019230; COGs: COG4752 conserved hypothetical protein; KEGG: gme:Gmet_2867 hypothetical protein; SPTR: A1HN71 Putative uncharacterized protein; PFAM: Protein of unknown function DUF2168.
  
     0.598
SMB93630.1
InterPro IPR004136; COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; KEGG: dde:Dde_1586 2-nitropropane dioxygenase family oxidoreductase; SPTR: A1HN84 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase NPD.
       0.521
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.505
rpmF
LSU ribosomal protein L32P; InterPro IPR002677; KEGG: gur:Gura_1873 50S ribosomal protein L32; SPTR: Q24U37 50S ribosomal protein L32; PFAM: ribosomal L32p protein; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
     0.487
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   0.475
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.