STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB93796.1InterPro IPR004088; COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: dal:Dalk_4648 hypothetical protein; SPTR: Q8XJP5 UPF0109 protein CPE1711; Belongs to the UPF0109 family. (76 aa)    
Predicted Functional Partners:
rpsP
InterPro IPR000307; COGs: COG0228 Ribosomal protein S16; KEGG: ppd:Ppro_1098 30S ribosomal protein S16; SPTR: B0TH64 30S ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
  
 0.987
SMB87533.1
spoIIIJ-associated protein; InterPro IPR001374; COGs: COG1847 RNA-binding protein; KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain protein; SPTR: Q9RCA6 Protein jag; SMART: single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein.
  
 
 0.968
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
    0.921
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
  
 0.887
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
    0.839
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
    0.838
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
   
    0.827
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
    0.825
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
    0.813
rpsI
SSU ribosomal protein S9P; InterPro IPR000754; COGs: COG0103 Ribosomal protein S9; KEGG: gme:Gmet_0607 30S ribosomal protein S9; SPTR: A3DGC4 30S ribosomal protein S9; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
    0.807
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.