STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
SMB94553.1Trk system potassium uptake protein TrkH; InterPro IPR003445; COGs: COG0168 Trk-type K+ transport systems membrane components; KEGG: dde:Dde_2029 K+ transporter trk; SPTR: Q465Z6 Trk system potassium uptake protein; PFAM: cation transporter. (481 aa)    
Predicted Functional Partners:
SMB94551.1
InterPro IPR006037:IPR003148; COGs: COG0569 K+ transport systems NAD-binding component; KEGG: lip:LI0774 potassium transporter peripheral membrane component; SPTR: A1HP21 TrkA-N domain protein; PFAM: TrkA-C domain protein; TrkA-N domain protein.
 
 
 0.986
SMB94548.1
InterPro IPR006036:IPR006037:IPR003148; COGs: COG0569 K+ transport systems NAD-binding component; KEGG: sat:SYN_02618 potassium transporter peripheral membrane component; SPTR: A1HP21 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein.
 
 
 0.982
SMB79131.1
H+/Cl-antiporter ClcA; InterPro IPR001807:IPR006037; COGs: COG0038 Chloride channel protein EriC; KEGG: lip:LI0601 voltage-gated chloride channel family protein; SPTR: A5KP61 Putative uncharacterized protein; PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein.
  
 
 0.890
SMB83330.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase; InterPro IPR001450:IPR019752:IPR019456:IPR002880:IPR017900:IPR0118 95; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SPTR: A1HPH8 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreduct [...]
   
 
 0.775
SMB79082.1
Voltage-gated potassium channel; InterPro IPR003091:IPR013099:IPR005821; KEGG: pca:Pcar_0515 ion transport protein; SPTR: Q8TP82 Potassium channel protein; PFAM: Ion transport protein; Ion transport 2 domain protein.
  
 
 0.752
SMB87152.1
Voltage-gated potassium channel; InterPro IPR013099:IPR006037:IPR003148; COGs: COG0569 K+ transport systems NAD-binding component; KEGG: pca:Pcar_3127 K+ transport systems, NAD-binding component; SPTR: A6UW47 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein.
  
 
 0.752
SMB88157.1
Regulatory protein, gntR family; InterPro IPR006037:IPR000524; COGs: COG2188 Transcriptional regulators; KEGG: csa:Csal_1764 transcriptional regulator, GntR family; SPTR: A3I5I9 Transcriptional regulator, GntR family protein; SMART: regulatory protein GntR HTH; PFAM: TrkA-C domain protein; regulatory protein GntR HTH.
  
 
 0.752
SMB94559.1
Ferric uptake regulator, Fur family; InterPro IPR002481; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: pca:Pcar_1952 negative regulator of ferric uptake; SPTR: A1HT98 Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; Belongs to the Fur family.
     
 0.717
SMB93408.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.578
SMB95186.1
Diguanylate cyclase (GGDEF) domain-containing protein; InterPro IPR000160:IPR006674:IPR003660:IPR003607; COGs: COG2206 HD-GYP domain; KEGG: ppr:PBPRA1970 hypothetical protein; SPTR: Q0W2L1 Putative signal transduction protein; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region; histidine kinase HAMP region domain protein; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; histidine kinase HAMP region domain protein; TIGRFAM: diguanylate cyclase.
   
 
 0.575
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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