STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB94567.1Hypothetical protein; InterPro IPR004007:IPR019986; COGs: COG1461 kinase related to dihydroxyacetone kinase; KEGG: dde:Dde_1644 DegV family protein; SPTR: A5KLE4 Putative uncharacterized protein; PFAM: Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV. (538 aa)    
Predicted Functional Partners:
SMB92315.1
EDD domain protein, DegV family; InterPro IPR003797; COGs: COG1307 conserved hypothetical protein; KEGG: dvl:Dvul_1226 DegV family protein; SPTR: Q97IL6 UPF0230 protein CA_C1624; PFAM: DegV family protein; TIGRFAM: degV family protein.
 
 0.996
SMB96498.1
EDD domain protein, DegV family; InterPro IPR003797; COGs: COG1307 conserved hypothetical protein; KEGG: dde:Dde_1644 DegV family protein; SPTR: Q8R9U5 UPF0230 protein TTE1491; PFAM: DegV family protein; TIGRFAM: degV family protein.
 
 0.993
SMB94570.1
tRNA (cytidine/uridine-2'-O-)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.658
SMB94563.1
Hypothetical protein; SPTR: Q0W555 Putative uncharacterized protein.
       0.518
SMB94845.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family; InterPro IPR005531:IPR005829; COGs: COG1302 conserved hypothetical protein; SPTR: A1HQ70 Putative uncharacterized protein; PFAM: protein of unknown function DUF322.
 
  
 0.489
SMB93563.1
KEGG: predicted protein; SPTR: A1HN98 Putative uncharacterized protein.
 
     0.456
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.437
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
     0.432
SMB94858.1
Hypothetical protein; SPTR: A1HQ69 Putative uncharacterized protein.
  
  
 0.408
SMB96453.1
Hypothetical protein; SPTR: A1HUD7 Putative uncharacterized protein.
  
  
 0.408
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.