STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB94570.1tRNA (cytidine/uridine-2'-O-)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (153 aa)    
Predicted Functional Partners:
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      0.685
SMB94567.1
Hypothetical protein; InterPro IPR004007:IPR019986; COGs: COG1461 kinase related to dihydroxyacetone kinase; KEGG: dde:Dde_1644 DegV family protein; SPTR: A5KLE4 Putative uncharacterized protein; PFAM: Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV.
       0.658
dinG
ATP-dependent DNA helicase DinG; 3'-5' exonuclease.
 
     0.511
SMB78954.1
FAD dependent oxidoreductase; InterPro IPR000447:IPR006076; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); KEGG: mes:Meso_3508 FAD dependent oxidoreductase; SPTR: Q8TTH0 Putative uncharacterized protein; PFAM: FAD dependent oxidoreductase.
     
 0.457
SMB78972.1
Rieske Fe-S protein; InterPro IPR005805:IPR017941; COGs: COG0723 Rieske Fe-S protein; KEGG: mxa:MXAN_1554 Rieske family iron-sulfur cluster-binding protein; SPTR: A3CUS2 FAD dependent oxidoreductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain.
     
 0.457
SMB94563.1
Hypothetical protein; SPTR: Q0W555 Putative uncharacterized protein.
       0.449
SMB93408.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.438
SMB94573.1
Adenosylhomocysteinase; InterPro IPR015878:IPR006140:IPR000043:IPR020082; COGs: COG0499 S-adenosylhomocysteine hydrolase; KEGG: sfu:Sfum_0366 adenosylhomocysteinase; SPTR: B5IT67 Adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; S-adenosyl-L-homocysteine hydrolase; PRIAM: Adenosylhomocysteinase.
       0.419
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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