STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB88578.1YvrJ protein family protein. (49 aa)    
Predicted Functional Partners:
SMB88580.1
ComK protein.
 
     0.853
SMB85565.1
Hypothetical protein; KEGG: kpe:KPK_0488 serine endoprotease; SPTR: A1HSZ7 Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain.
  
     0.521
SMB86410.1
Spore cortex biosynthesis protein YabQ; InterPro IPR019074:IPR014242; KEGG: hypothetical protein; SPTR: A1HRS7 Putative uncharacterized protein; PFAM: Spore cortex biosynthesis protein, YabQ-like; TIGRFAM: spore cortex biosynthesis protein YabQ.
  
     0.493
SMB88537.1
Protein of unknown function; SPTR: A3I790 Putative uncharacterized protein.
 
     0.487
SMB92078.1
KEGG: bpe:BP2974 putative integral membrane protein; SPTR: A3I5C7 Putative uncharacterized protein.
  
     0.424
SMB92779.1
Predicted oxidoreductase; InterPro IPR020471:IPR001395:IPR001450:IPR017900; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); KEGG: gbm:Gbem_2501 aldo/keto reductase; SPTR: A1HU99 Aldo/keto reductase; PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.422
SMB94861.1
Small integral membrane protein; InterPro IPR018730; SPTR: A1HQ68 Putative uncharacterized protein; PFAM: Protein of unknown function DUF2273.
  
     0.401
SMB88577.1
Conserved hypothetical protein (putative transposase or invertase); InterPro IPR010106; KEGG: ott:OTT_0553 hypothetical protein; SPTR: Q2FP67 Putative uncharacterized protein.
       0.401
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.