STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB88858.1Nuclease-related domain-containing protein; KEGG: sun:SUN_1494 hypothetical protein; SPTR: Q8KYT4 Uncharacterized protein pXO1-01/BXA0003/GBAA_pXO1_0003; PFAM: NERD domain protein; InterPro IPR011528. (232 aa)    
Predicted Functional Partners:
SMB83330.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase; InterPro IPR001450:IPR019752:IPR019456:IPR002880:IPR017900:IPR0118 95; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SPTR: A1HPH8 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreduct [...]
  
   0.812
SMB96547.1
Phosphosulfolactate synthase; InterPro IPR003830; COGs: COG1809 conserved hypothetical protein; KEGG: xau:Xaut_4872 phosphosulfolactate synthase; SPTR: O27710 Phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase ComA; PRIAM: Phosphosulfolactate synthase.
   
    0.600
SMB92102.1
Formate dehydrogenase iron-sulfur subunit; InterPro IPR001450:IPR017900; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; KEGG: gur:Gura_3387 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: P33389 Protein DVU_0535; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
    0.589
leuS
leucyl-tRNA synthetase; InterPro IPR002302:IPR015413:IPR013155:IPR002300:IPR001412; COGs: COG0495 Leucyl-tRNA synthetase; KEGG: gme:Gmet_2300 leucyl-tRNA synthetase; SPTR: Q2RKZ1 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.499
SMB88896.1
Conserved hypothetical protein (putative transposase or invertase); KEGG: vsa:VSAL_I0039 transposase.
       0.484
SMB95481.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.463
SMB87695.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.463
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.451
SMB82640.1
Conserved hypothetical protein (putative transposase or invertase); KEGG: wol:WD0296 hypothetical protein; SPTR: Q2FP67 Putative uncharacterized protein.
  
     0.417
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.