STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB88923.1InterPro IPR018044:IPR012854:IPR001967; COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; KEGG: lpf:lpl1517 hypothetical protein; SPTR: P38422 D-alanyl-D-alanine carboxypeptidase dacF; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; copper amine oxidase domain protein. (493 aa)    
Predicted Functional Partners:
SMB96443.1
InterPro IPR001460:IPR005543:IPR005311:IPR011927; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; KEGG: gme:Gmet_0406 penicillin-binding protein, transpeptidase; SPTR: A1HU58 Stage V sporulation protein D; SMART: PASTA domain containing protein; PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; TIGRFAM: stage V sporulation protein D.
 
 
 0.747
SMB90823.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); InterPro IPR018044:IPR001967:IPR012907:IPR018247; KEGG: pfl:PFL_5448 D-alanyl-D-alanine carboxypeptidase; SPTR: A1HMK4 Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.602
SMB88912.1
ATP-dependent DNA helicase RecG; InterPro IPR007421; COGs: COG2865 transcriptional regulator protein; KEGG: spc:Sputcn32_3983 putative transcriptional regulator; SPTR: Q12YI7 Divergent AAA ATPase; PFAM: AAA-4 family protein.
       0.598
SMB95959.1
Penicillin-binding protein 1A; InterPro IPR001460:IPR001264:IPR003961:IPR011816; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase; SPTR: A1HPE8 Penicillin-binding protein, 1A family; SMART: Fibronectin type III domain protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; TIGRFAM: penicillin-binding protein, 1A family.
     
 0.597
SMB94142.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); InterPro IPR018044:IPR001967; COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; KEGG: lpc:LPC_0928 D-alanyl-D-alanine carboxypeptidase; SPTR: A1HTN2 Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
 
  
 
0.584
SMB92166.1
Peptidoglycan glycosyltransferase; InterPro IPR001460:IPR005311:IPR017790; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; KEGG: gme:Gmet_0928 peptidoglycan glycosyltransferase; SPTR: A1HP01 Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
 
 
 0.575
SMB96230.1
Stage V sporulation protein AD; InterPro IPR010894:IPR001412; SPTR: A1HRA0 Stage V sporulation AD family protein; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
   
 0.495
SMB95580.1
Penicillin-binding protein 2; InterPro IPR001460:IPR005311; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; KEGG: geo:Geob_3477 penicillin-binding protein 2; SPTR: A1HQ86 Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase.
  
 
 0.479
SMB88937.1
Protein-tyrosine phosphatase; InterPro IPR004013; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: pca:Pcar_1540 capsular polysaccharide biosynthesis protein; SPTR: P96717 Tyrosine-protein phosphatase ywqE; PFAM: PHP domain protein; PRIAM: Protein-tyrosine-phosphatase.
       0.473
SMB94369.1
Spore maturation protein A; InterPro IPR011642; COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis; KEGG: lpc:LPC_2734 spore maturation protein A; SPTR: A1HTN1 Nucleoside recognition domain protein; PFAM: nucleoside recognition domain protein.
  
  
 0.461
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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