STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB89856.1GHKL domain-containing protein; KEGG: kpe:KPK_4688 sensor histidine kinase; SPTR: A4EA31 Putative uncharacterized protein. (423 aa)    
Predicted Functional Partners:
SMB89862.1
Two component transcriptional regulator, LytTR family; InterPro IPR007492:IPR001789; COGs: COG3279 Response regulator of the LytR/AlgR family; KEGG: hypothetical protein; SPTR: A4EA30 Putative uncharacterized protein; SMART: response regulator receiver; PFAM: response regulator receiver; LytTr DNA-binding region.
 
 
 0.989
SMB89890.1
Predicted membrane protein; InterPro IPR018702:IPR018271; SPTR: A4EC18 Putative uncharacterized protein; PFAM: Protein of unknown function DUF2207, membrane.
 
     0.818
SMB87933.1
Accessory gene regulator B; InterPro IPR006741; COGs: COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide; SPTR: Q0SSQ8 Putative agrB-like protein; SMART: Accessory gene regulator B; PFAM: Accessory gene regulator B.
 
  
  0.794
SMB89903.1
Ig-like domain (group 4); InterPro IPR001119:IPR018392:IPR002482:IPR000169; KEGG: hypothetical protein; SMART: Peptidoglycan-binding LysM; PFAM: S-layer domain protein; Peptidoglycan-binding lysin domain; SPTR: P38536 Amylopullulanase.
 
     0.762
SMB89881.1
LemA protein; InterPro IPR007156; COGs: COG1704 conserved hypothetical protein; KEGG: bbt:BBta_2315 hypothetical protein; SPTR: A2UAL5 LemA; PFAM: LemA family protein.
 
     0.517
SMB89878.1
Hypothetical protein.
       0.511
SMB81044.1
S-layer homology domain-containing protein; InterPro IPR001119:IPR002479:IPR001862:IPR018337; KEGG: spe:Spro_2388 membrane attack complex component/perforin/complement C9; SPTR: P38536 Amylopullulanase; PFAM: S-layer domain protein; putative cell wall binding repeat-containing protein; membrane attack complex component/perforin/complement C9.
  
     0.494
SMB92442.1
Tripartite ATP-independent transporter solute receptor, DctP family; InterPro IPR018389:IPR004682; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: dps:DP3054 DctP (periplasmic C4-dicarboxylate binding protein); SPTR: A1HSQ1 TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit.
    
 0.475
SMB80043.1
Recombinase zinc beta ribbon domain-containing protein; SPTR: A2U5P8 Recombinase; KEGG: hypothetical protein.
  
 
   0.429
SMB89764.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein; InterPro IPR000160:IPR013656:IPR013767:IPR001610:IPR000014:IPR0007 00; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; KEGG: bja:bll1362 hypothetical protein; SPTR: A0YMH5 PleD-like protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; TIGRFAM: diguanylate cyclase; PAS sensor protein.
   
 
  0.428
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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