STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB89954.1Integrase/recombinase XerD; InterPro IPR004107:IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: geo:Geob_0753 tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A1HTQ3 Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (294 aa)    
Predicted Functional Partners:
SMB95161.1
Phage integrase family protein; InterPro IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: dds:Ddes_2240 integrase family protein; SPTR: A3F636 Probable site-specific tyrosine recombinase xerc_like; PFAM: integrase family protein.
  
     0.688
SMB83330.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase; InterPro IPR001450:IPR019752:IPR019456:IPR002880:IPR017900:IPR0118 95; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SPTR: A1HPH8 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreduct [...]
    
  0.633
SMB96300.1
DNA translocase FtsK; SMART: AAA ATPase; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; KEGG: sat:SYN_01274 cell division protein; SPTR: A1HSD6 Cell divisionFtsK/SpoIIIE; InterPro IPR018541:IPR002543:IPR003593; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.538
SMB85754.1
comF family protein; InterPro IPR001878:IPR002375; COGs: COG1040 amidophosphoribosyltransferase; KEGG: gsu:GSU0124 competence protein F, putative; SPTR: A2PFB2 ComF family protein.
   
    0.477
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.466
hslV
ATP dependent peptidase CodWX, CodW component. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.448
SMB89207.1
Prephenate dehydrogenase; InterPro IPR003099:IPR002912:IPR001732; COGs: COG0287 Prephenate dehydrogenase; KEGG: pca:Pcar_1886 cyclohexadienyl/prephenate dehydrogenase; SPTR: A2RH56 Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: Prephenate dehydrogenase.
  
    0.413
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.407
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.