STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmALSU ribosomal protein L27P; InterPro IPR001684:IPR018261; COGs: COG0211 Ribosomal protein L27; KEGG: geo:Geob_1245 ribosomal protein L27; SPTR: Q8RBA7 50S ribosomal protein L27; PFAM: ribosomal protein L27; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (97 aa)    
Predicted Functional Partners:
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.999
rpsP
InterPro IPR000307; COGs: COG0228 Ribosomal protein S16; KEGG: ppd:Ppro_1098 30S ribosomal protein S16; SPTR: B0TH64 30S ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.997
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.997
rpsI
SSU ribosomal protein S9P; InterPro IPR000754; COGs: COG0103 Ribosomal protein S9; KEGG: gme:Gmet_0607 30S ribosomal protein S9; SPTR: A3DGC4 30S ribosomal protein S9; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.997
rpsB
SSU ribosomal protein S2P; InterPro IPR001865:IPR018130:IPR005706; COGs: COG0052 Ribosomal protein S2; KEGG: gme:Gmet_1250 30S ribosomal protein S2; SPTR: B0THD7 30S ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.996
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 
 0.996
rplQ
InterPro IPR000456; COGs: COG0203 Ribosomal protein L17; KEGG: gme:Gmet_0654 50S ribosomal protein L17; SPTR: B0K5S2 50S ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
 
 0.996
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.996
SMB80376.1
Hypothetical protein; InterPro IPR007422; COGs: COG2868 ribosomal protein; SPTR: A5KLI1 Putative uncharacterized protein; PFAM: protein of unknown function DUF464.
  
 
 0.995
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 
 0.995
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.