STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86373.1Membrane protein of unknown function; KEGG: dvm:DvMF_0858 hypothetical protein. (92 aa)    
Predicted Functional Partners:
SMB86363.1
Membrane protein of unknown function; InterPro IPR005642; COGs: COG2431 membrane protein; KEGG: dde:Dde_2305 hypothetical protein; SPTR: Q0W307 Putative uncharacterized protein; PFAM: protein of unknown function DUF340 membrane.
       0.773
argS
arginyl-tRNA synthetase; InterPro IPR015945:IPR005148:IPR008909:IPR001412:IPR001278; COGs: COG0018 Arginyl-tRNA synthetase; KEGG: sat:SYN_00994 arginyl-tRNA synthetase; SPTR: A4J9D2 Arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; TIGRFAM: arginyl-tRNA synthetase.
       0.553
SMB86379.1
Spore germination protein; InterPro IPR014239; SPTR: Q9RC82 Sporulation protein ypeB; TIGRFAM: germination protein YpeB.
       0.500
SMB86386.1
N-acetylmuramoyl-L-alanine amidase; InterPro IPR002477:IPR011105:IPR014224; COGs: COG3773 Cell wall hydrolyses involved in spore germination; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase; SPTR: A1XPM6 SleB; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein; TIGRFAM: spore cortex-lytic enzyme.
       0.482
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.