STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86379.1Spore germination protein; InterPro IPR014239; SPTR: Q9RC82 Sporulation protein ypeB; TIGRFAM: germination protein YpeB. (449 aa)    
Predicted Functional Partners:
SMB86386.1
N-acetylmuramoyl-L-alanine amidase; InterPro IPR002477:IPR011105:IPR014224; COGs: COG3773 Cell wall hydrolyses involved in spore germination; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase; SPTR: A1XPM6 SleB; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein; TIGRFAM: spore cortex-lytic enzyme.
 
  
 0.980
SMB86237.1
Stage II sporulation protein E; InterPro IPR010822:IPR001932:IPR014221; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; KEGG: hypothetical protein; SPTR: P37475 Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; PFAM: Stage II sporulation E family protein; PRIAM: Phosphoprotein phosphatase; TIGRFAM: stage II sporulation protein E.
 
     0.755
SMB96412.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.754
SMB88020.1
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: hypothetical protein; SPTR: A3F902 GerUC; PFAM: spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family.
 
     0.739
SMB95245.1
Stage II sporulation protein M; InterPro IPR002798:IPR014196; SPTR: A1HTQ4 Required for dissolution of the septal cell wall; RBL05740; PFAM: protein of unknown function DUF95 transmembrane; TIGRFAM: stage II sporulation protein M.
  
     0.707
SMB88016.1
Spore germination protein (amino acid permease); InterPro IPR004761; KEGG: hypothetical protein; SPTR: A3I675 Putative uncharacterized protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein.
 
     0.707
SMB87963.1
Spore germination protein KC; InterPro IPR008844; KEGG: hypothetical protein; SPTR: A3I9M6 Spore germination protein KC; PFAM: spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family.
 
     0.697
SMB94816.1
Stage III sporulation protein AE; InterPro IPR014194; KEGG: Hypothetical protein CBG09235; SPTR: A1HQ74 Mutants block sporulation after engulfment; PFAM: Sporulation stage III protein AE; TIGRFAM: stage III sporulation protein AE.
  
     0.696
SMB83086.1
Sporulation protein YtrH; SPTR: A2UAV0 Putative uncharacterized protein.
  
     0.674
SMB94797.1
InterPro IPR014198; SPTR: Q01368 Stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; TIGRFAM: stage III sporulation protein AB.
  
     0.665
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.