STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86420.1Sporulation protein YabP; InterPro IPR012504; SPTR: A3IEA4 Putative uncharacterized protein; PFAM: YabP family protein; TIGRFAM: sporulation protein YabP. (132 aa)    
Predicted Functional Partners:
SMB86410.1
Spore cortex biosynthesis protein YabQ; InterPro IPR019074:IPR014242; KEGG: hypothetical protein; SPTR: A1HRS7 Putative uncharacterized protein; PFAM: Spore cortex biosynthesis protein, YabQ-like; TIGRFAM: spore cortex biosynthesis protein YabQ.
  
  
 0.967
SMB86431.1
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain; InterPro IPR002942; COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); SPTR: Q9KGI8 Uncharacterized protein BH0073; SMART: RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; KEGG: afr:AFE_0164 S4 domain protein.
  
    0.876
SMB86435.1
Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.731
SMB86405.1
Septum formation initiator; InterPro IPR007060:IPR011922; KEGG: geo:Geob_2927 septum formation initiator; SPTR: A1HRS6 Septum formation initiator; PFAM: Septum formation initiator; TIGRFAM: cell division protein FtsL.
  
  
 0.657
SMB89484.1
Small acid-soluble spore protein F (minor alpha/beta-type SASP); InterPro IPR018126; SPTR: P37549 Protein sspF.
  
     0.650
SMB86458.1
Stage V sporulation protein B; InterPro IPR004268:IPR002797:IPR002528; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: hypothetical protein; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; SPTR: A1HRU7 Polysaccharide biosynthesis protein.
  
  
 0.641
SMB86447.1
Tetrapyrrole methylase family protein / MazG family protein; InterPro IPR000878:IPR004518:IPR011551; COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; KEGG: geo:Geob_1879 MazG family protein; SPTR: A1HRU6 MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; TIGRFAM: MazG family protein.
  
    0.609
SMB94803.1
InterPro IPR009570; SPTR: A1HQ76 Stage III sporulation AC family protein; PFAM: Stage III sporulation AC family protein; TIGRFAM: stage III sporulation protein AC.
  
  
 0.587
SMB96412.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.580
SMB86469.1
Transcriptional regulator, AbrB family; InterPro IPR003018:IPR007159:IPR014213:IPR006339; SPTR: A1HRU8 Transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; GAF domain protein; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family.
 
     0.562
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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