STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86927.1tRNA1(Val) A37 N6-methylase TrmN6; InterPro IPR007848:IPR002052; COGs: COG4123 O-methyltransferase; KEGG: sat:SYN_01006 methyltransferase; SPTR: A1HPS6 Methyltransferase small; PFAM: methyltransferase small; Belongs to the methyltransferase superfamily. (254 aa)    
Predicted Functional Partners:
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
 0.978
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
    0.858
SMB86930.1
Regulator of replication initiation timing; InterPro IPR010377; COGs: COG4467 conserved hypothetical protein; SPTR: Q81JB2 Initiation-control protein yabA; PFAM: protein of unknown function DUF972.
  
  
 0.828
SMB86938.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development); InterPro IPR007557; COGs: COG1774 Uncharacterized homolog of PSP1; KEGG: signal peptidase-like protein; SPTR: A1HPS5 PSP1 domain protein; PFAM: PSP1 domain protein.
 
    0.774
tmcAL
Predicted nucleotidyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
     0.745
SMB86946.1
DNA polymerase III, delta prime subunit; InterPro IPR003593:IPR004622; COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: pca:Pcar_1692 DNA polymerase III, gamma/tau subunits; SPTR: P37540 DNA polymerase III subunit delta'; SMART: AAA ATPase; PRIAM: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta prime subunit.
      0.718
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.616
SMB86960.1
Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro IPR000310:IPR008286; COGs: COG1982 Arginine/lysine/ornithine decarboxylase; KEGG: Os03g0848100; hypothetical protein; SPTR: P21885 Arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein.
  
    0.593
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
      0.585
SMB96651.1
Putative endonuclease; InterPro IPR000305; COGs: COG2827 endonuclease containing a URI domain; KEGG: sat:SYN_00393 endonuclease; SPTR: A5KQY1 Putative uncharacterized protein; SMART: Excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC C subunit domain protein.
  
  
 0.582
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.