STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB87285.1Alanine or glycine:cation symporter, AGCS family; InterPro IPR001463; COGs: COG1115 Na+/alanine symporter; KEGG: maq:Maqu_0255 amino acid carrier protein; SPTR: A3JAY1 Putative sodium/alanine symporter; PFAM: sodium:alanine symporter; TIGRFAM: amino acid carrier protein. (482 aa)    
Predicted Functional Partners:
SMB87281.1
InterPro IPR000277:IPR006235; COGs: COG2873 O-acetylhomoserine sulfhydrylase; KEGG: gbm:Gbem_3288 O-acetylhomoserine/O-acetylserine sulfhydrylase; SPTR: A5KQZ7 Putative uncharacterized protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase.
       0.425
SMB79131.1
H+/Cl-antiporter ClcA; InterPro IPR001807:IPR006037; COGs: COG0038 Chloride channel protein EriC; KEGG: lip:LI0601 voltage-gated chloride channel family protein; SPTR: A5KP61 Putative uncharacterized protein; PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein.
  
    0.401
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.