STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB90277.1Hypothetical protein; SPTR: A3I5U9 Putative uncharacterized protein. (159 aa)    
Predicted Functional Partners:
SMB90281.1
histidyl-tRNA synthetase; InterPro IPR002314:IPR006195; COGs: COG0124 Histidyl-tRNA synthetase; KEGG: hhe:HH1809 histidyl-tRNA synthetase; SPTR: A4AJB9 Histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); PRIAM: Histidine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.615
SMB90285.1
DNA repair exonuclease SbcCD nuclease subunit; SPTR: A0P3H3 Putative uncharacterized protein; PFAM: metallophosphoesterase; InterPro IPR004843; COGs: COG0420 DNA repair exonuclease; KEGG: pna:Pnap_1662 metallophosphoesterase.
 
     0.501
SMB90274.1
Pyruvate, water dikinase; InterPro IPR008279:IPR002192; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; KEGG: scl:sce4177 phosphoenolpyruvate synthase; SPTR: Q466P7 Phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PRIAM: Pyruvate, water dikinase.
 
     0.497
SMB90288.1
Uncharacterized protein YhaN; COGs: COG4717 conserved hypothetical protein; KEGG: Viral A-type inclusion protein repeat; SPTR: Q58718 DNA double-strand break repair rad50 ATPase.
       0.408
SMB91323.1
Signal transduction histidine kinase; InterPro IPR003594:IPR003661:IPR005467; COGs: COG0642 Signal transduction histidine kinase; KEGG: net:Neut_0136 periplasmic sensor signal transduction histidine kinase; SPTR: A5KIM6 Sensor protein; SMART: histidine kinase A domain protein; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein.
  
     0.404
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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