STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB90945.1InterPro IPR002810; COGs: COG1030 Membrane-bound serine protease (ClpP class); KEGG: scl:sce5335 hypothetical protein; SPTR: A3ID27 YqeZ; PFAM: protein of unknown function DUF107. (432 aa)    
Predicted Functional Partners:
SMB90949.1
Uncharacterized protein YqfA, UPF0365 family; InterPro IPR001107; COGs: COG4864 conserved hypothetical protein; KEGG: dol:Dole_0018 hypothetical protein; SPTR: B0K165 UPF0365 protein Teth514_1573; PFAM: band 7 protein.
 
  
 0.991
SMB90943.1
Hypothetical protein; InterPro IPR019004; COGs: COG1610 conserved hypothetical protein; KEGG: nis:NIS_0988 GatB/YqeY domain-containing protein; SPTR: A1HR17 GatB/Yqey domain protein; PFAM: Protein of unknown function YOR215C, mitochondrial.
       0.670
rpsU
SSU ribosomal protein S21P; InterPro IPR001911:IPR018278; KEGG: ilo:IL2202 30S ribosomal protein S21; SPTR: A1HR16 30S ribosomal protein S21; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.651
SMB90952.1
Hypothetical protein; KEGG: AGAP003331-PA.
       0.535
SMB90925.1
Histidine triad (HIT) family protein; InterPro IPR001310:IPR019808; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; KEGG: mmw:Mmwyl1_2991 histidine triad (HIT) protein; SPTR: A3J8I9 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family Hydrolase; PFAM: histidine triad (HIT) protein.
       0.499
SMB92264.1
Tetratricopeptide repeat-containing protein; InterPro IPR001440:IPR013105:IPR019734:IPR013026; COGs: COG3063 Tfp pilus assembly protein PilF; KEGG: TPR Domain containing protein; SPTR: Q24CU0 TPR Domain containing protein; SMART: Tetratricopeptide repeat; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein.
 
     0.443
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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