STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB91000.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (135 aa)    
Predicted Functional Partners:
SMB87416.1
Thymidine phosphorylase; InterPro IPR013102:IPR000312:IPR017459:IPR017872:IPR018090; COGs: COG0213 Thymidine phosphorylase; KEGG: afw:Anae109_0662 pyrimidine-nucleoside phosphorylase; SPTR: P77836 Pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; TIGRFAM: pyrimidine-nucleoside phosphorylase.
 
 0.995
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.974
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.951
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
     0.933
SMB83253.1
Uridine kinase; InterPro IPR000764:IPR003593; COGs: COG0572 Uridine kinase; KEGG: ade:Adeh_3723 cyclic nucleotide-binding domain-containing protein; SPTR: A1HRZ0 Phosphoribulokinase/uridine kinase; SMART: AAA ATPase.
 
  
 0.865
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.765
SMB95221.1
Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.747
SMB80869.1
SPTR: A2UAQ3 Dynamin; KEGG: hypothetical protein.
  
    0.739
SMB80870.1
Small GTP-binding protein domain-containing protein; InterPro IPR001401:IPR002917; KEGG: hypothetical protein; SPTR: A2UAQ3 Dynamin; PFAM: Dynamin family protein; GTP-binding protein HSR1-related.
  
    0.739
SMB90980.1
InterPro IPR003714; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; KEGG: pca:Pcar_1231 putative ATP-binding protein in pho regulon; SPTR: A1HPD4 PhoH family protein; PFAM: PhoH family protein.
  
    0.734
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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