STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB95946.1Sporulation protein YunB; InterPro IPR019061:IPR014197; SPTR: A1HPD8 Putative uncharacterized protein; PFAM: Sporulation protein YunB-like; TIGRFAM: sporulation protein YunB. (231 aa)    
Predicted Functional Partners:
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
 
     0.737
SMB96412.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.737
SMB96402.1
Sporulation protein, YlmC/YmxH family; InterPro IPR007903:IPR014238; SPTR: A1HS93 PRC-barrel domain protein; PFAM: PRC-barrel domain protein; TIGRFAM: sporulation protein, YlmC/YmxH family.
  
   
 0.720
SMB94361.1
Sporulation protein YtfJ; InterPro IPR014229; COGs: COG3874 conserved hypothetical protein; KEGG: rfr:Rfer_0173 hypothetical protein; SPTR: A1HTN3 Putative uncharacterized protein; PFAM: Sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ.
  
   
 0.710
SMB96404.1
Stage II sporulation protein R; InterPro IPR014202; KEGG: hypothetical protein similar to clathrin coat assembly protein ap50; SPTR: P39151 Stage II sporulation protein R; PFAM: Sporulation stage II protein R; TIGRFAM: stage II sporulation protein R.
  
     0.706
SMB94506.1
Sporulation protein, YlmC/YmxH family; InterPro IPR007903:IPR014238; SPTR: A1HSC7 PRC-barrel domain protein; PFAM: PRC-barrel domain protein; TIGRFAM: sporulation protein, YlmC/YmxH family.
  
   
 0.700
SMB90975.1
InterPro IPR010690; SPTR: A1HPD5 Putative stage IV sporulation YqfD; PFAM: putative stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD.
  
     0.695
SMB94437.1
Protein of unknown function; SPTR: A1HTV7 Putative uncharacterized protein.
  
     0.680
SMB85565.1
Hypothetical protein; KEGG: kpe:KPK_0488 serine endoprotease; SPTR: A1HSZ7 Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain.
  
     0.677
SMB94790.1
KEGG: hypothetical protein LOC100013412; SPTR: A1HQ79 Putative uncharacterized protein.
  
     0.675
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.