STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB96032.1YlzJ-like protein; SPTR: A1HSD5 Putative uncharacterized protein. (70 aa)    
Predicted Functional Partners:
SMB96036.1
InterPro IPR001907; COGs: COG0740 Protease subunit of ATP-dependent Clp protease; KEGG: ank:AnaeK_3435 ATP-dependent Clp protease, proteolytic subunit ClpP; SPTR: A1HSD4 Peptidase S14, ClpP; PFAM: peptidase S14 ClpP.
  
  
 0.853
rnj
Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.584
SMB96025.1
Hypothetical protein.
       0.418
SMB96027.1
InterPro IPR014199; SPTR: A1HTC6 Putative uncharacterized protein; PFAM: Sporulation protein YtxC; KEGG: hypothetical protein.
       0.418
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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