STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimOSSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (446 aa)    
Predicted Functional Partners:
SMB96292.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; InterPro IPR000462:IPR004570; COGs: COG0558 Phosphatidylglycerophosphate synthase; KEGG: lip:LI0373 phosphatidylglycerophosphate synthase; SPTR: A3ICB1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase); PFAM: CDP-alcohol phosphatidyltransferase; PRIAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase clas [...]
       0.841
SMB96290.1
InterPro IPR007686; COGs: COG1267 Phosphatidylglycerophosphatase A and related protein; KEGG: msu:MS0973 PgpA protein; SPTR: A3JED9 Phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A.
       0.823
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.782
SMB93408.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.685
SMB96279.1
ATP-dependent metalloprotease FtsH; InterPro IPR000642:IPR003959:IPR003593:IPR003960; COGs: COG0465 ATP-dependent Zn protease; KEGG: FTSH1; membrane AAA-metalloprotease (EC:3.4.24.-); K03798 cell division protease FtsH; SPTR: A1HLY1 Vesicle-fusing ATPase; SMART: AAA ATPase; PFAM: AAA ATPase central domain protein; peptidase M41; PRIAM: Vesicle-fusing ATPase; Belongs to the AAA ATPase family.
     
 0.666
SMB96298.1
Protein of unknown function; KEGG: gme:Gmet_2681 transcriptional regulator, putative; SPTR: O31771 Uncharacterized membrane protein ymfM.
       0.650
SMB96286.1
KEGG: hypothetical protein.
       0.647
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
   0.576
cinA
Nicotinamide-nucleotide amidase; InterPro IPR001453:IPR008136:IPR008135; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; KEGG: dds:Ddes_1466 competence/damage-inducible protein CinA; SPTR: A6M320 Putative competence-damage inducible protein; PFAM: CinA domain protein; molybdopterin binding domain; TIGRFAM: competence/damage-inducible protein CinA.
  
  
 0.565
SMB96220.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; InterPro IPR013027:IPR000103:IPR001327:IPR004099:IPR001763; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; KEGG: vpa:VPA0949 putative NADH oxidase; SPTR: A2P2Z9 NADH oxidase, putative; SMART: Rhodanese domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein.
  
 
 0.541
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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