STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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[Homology]
Score
speDS-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. (270 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 
 0.999
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.862
SMB96316.1
Arginine decarboxylase; InterPro IPR000310:IPR008286:IPR001597; KEGG: hypothetical protein; SPTR: A5LTC2 Lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; COGs: COG1982 Arginine/lysine/ornithine decarboxylase.
 
   
 0.814
SMB82225.1
Flagellar motor switch protein FliN/FliY; InterPro IPR001172:IPR001543:IPR007597:IPR012826; COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; KEGG: sde:Sde_2174 surface presentation of antigens (SpoA) protein; SPTR: A2U857 CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; TIGRFAM: flagellar motor switch protein FliN.
   
    0.783
SMB90636.1
Agmatinase; InterPro IPR005924:IPR006035:IPR005925; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; KEGG: dps:DP1391 agmatinase; SPTR: A4AEJ9 Putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; TIGRFAM: agmatinase; Belongs to the arginase family.
    
 0.558
SMB96122.1
Agmatinase; InterPro IPR005924:IPR006035:IPR005925; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; KEGG: ilo:IL1212 agmatinase; SPTR: Q81JT1 Agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; TIGRFAM: agmatinase; Belongs to the arginase family.
    
 0.558
SMB82393.1
InterPro IPR001172:IPR001543; COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; KEGG: tgr:Tgr7_1329 flagellar motor switch protein FliN; SPTR: A2U857 CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein.
   
    0.547
SMB96353.1
Putrescine aminotransferase; InterPro IPR005814; COGs: COG4992 Ornithine/acetylornithine aminotransferase; KEGG: rso:RS04713 putative aminotransferase protein; SPTR: A3S0N2 Acetylornithine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.495
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.484
SMB91840.1
InterPro IPR000183; COGs: COG0019 Diaminopimelate decarboxylase; KEGG: dat:HRM2_10630 LysA3; SPTR: O67262 Diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.
    
 0.484
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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